STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phbC_3PHA synthase. (596 aa)    
Predicted Functional Partners:
PhaR
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.769
Pta
Phosphate acetyl/butaryl transferase.
  
 0.677
Lche_2283
Poly(3-hydroxybutyrate) depolymerase.
 
   
 0.661
pta
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
  
 0.658
Lche_2407
Esterase.
 
   
 0.647
Lche_2332
Hypothetical protein.
       0.548
Lche_2334
Putative Cytochrome c, class I precursor.
       0.506
Lche_0384
Alpha-beta hydrolase family transporter esterase.
 
   
 0.486
Lche_2183
Hypothetical protein.
 
     0.400
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.