STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abcTABC transporter ATP-binding protein. (588 aa)    
Predicted Functional Partners:
uup_3
ABC transporter ATP-binding protein.
 
 
 0.867
pksJ_1
Polyketide synthase, type I.
  
 0.645
Lche_1834
acyl-CoA synthetase.
  
 0.645
Lche_2715
acyl-CoA synthetase.
  
 0.645
LagD
Toxin secretion ABC transporter ATP-binding protein.
   
 
 0.635
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.575
Lche_2125
ATP-binding transmembrane ABC transporter.
  
 
0.510
uup_1
ABC transporter ATP-binding protein Uup.
 
 
 0.488
Lche_2124
ABC transporter ATP binding transmembrane protein.
  
 
0.484
PksJ_2
Hypothetical protein.
  
 
 0.482
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.