Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ActP | kdpB | Lche_0863 | Lche_2353 | Copper efflux ATPase. | Potassium translocating ATPase, subunit B. | 0.855 |
EvgS | KdpD | Lche_0477 | Lche_2355 | Sensory box histidine kinase/response regulator. | Osmosensitive K+ channel His-kinase sensor. | 0.458 |
EvgS | Lche_1663 | Lche_0477 | Lche_1663 | Sensory box histidine kinase/response regulator. | Hypothetical protein. | 0.458 |
EvgS | kdpB | Lche_0477 | Lche_2353 | Sensory box histidine kinase/response regulator. | Potassium translocating ATPase, subunit B. | 0.850 |
EvgS | kdpC | Lche_0477 | Lche_2354 | Sensory box histidine kinase/response regulator. | Potassium translocating ATPase, subunit C; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex. | 0.869 |
KdpD | EvgS | Lche_2355 | Lche_0477 | Osmosensitive K+ channel His-kinase sensor. | Sensory box histidine kinase/response regulator. | 0.458 |
KdpD | kdpB | Lche_2355 | Lche_2353 | Osmosensitive K+ channel His-kinase sensor. | Potassium translocating ATPase, subunit B. | 0.988 |
KdpD | kdpC | Lche_2355 | Lche_2354 | Osmosensitive K+ channel His-kinase sensor. | Potassium translocating ATPase, subunit C; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex. | 0.989 |
KdpD | pnaB | Lche_2355 | Lche_2357 | Osmosensitive K+ channel His-kinase sensor. | NAD(P) transhydrogenase subunit beta. | 0.479 |
KdpD | pntA | Lche_2355 | Lche_2356 | Osmosensitive K+ channel His-kinase sensor. | Pyridine nucleotide transhydrogenase, alpha subunit. | 0.479 |
Lche_0060 | kdpB | Lche_0060 | Lche_2353 | Cadmium efflux ATPase. | Potassium translocating ATPase, subunit B. | 0.903 |
Lche_1663 | EvgS | Lche_1663 | Lche_0477 | Hypothetical protein. | Sensory box histidine kinase/response regulator. | 0.458 |
Lche_1663 | kdpB | Lche_1663 | Lche_2353 | Hypothetical protein. | Potassium translocating ATPase, subunit B. | 0.702 |
Lche_1663 | kdpC | Lche_1663 | Lche_2354 | Hypothetical protein. | Potassium translocating ATPase, subunit C; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex. | 0.732 |
cadA_2 | kdpB | Lche_3116 | Lche_2353 | Zinc, cobalt and lead efflux system. | Potassium translocating ATPase, subunit B. | 0.901 |
copA_2 | kdpB | Lche_2198 | Lche_2353 | Copper transporting P-type ATPase. | Potassium translocating ATPase, subunit B. | 0.902 |
kdpB | ActP | Lche_2353 | Lche_0863 | Potassium translocating ATPase, subunit B. | Copper efflux ATPase. | 0.855 |
kdpB | EvgS | Lche_2353 | Lche_0477 | Potassium translocating ATPase, subunit B. | Sensory box histidine kinase/response regulator. | 0.850 |
kdpB | KdpD | Lche_2353 | Lche_2355 | Potassium translocating ATPase, subunit B. | Osmosensitive K+ channel His-kinase sensor. | 0.988 |
kdpB | Lche_0060 | Lche_2353 | Lche_0060 | Potassium translocating ATPase, subunit B. | Cadmium efflux ATPase. | 0.903 |
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