STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2407Esterase. (344 aa)    
Predicted Functional Partners:
phbC_3
PHA synthase.
 
   
 0.647
phbC_2
Polyhydroxyalkanoic synthase.
 
   
 0.646
phbC_1
PHA synthase.
 
   
 0.642
PhbC_5
Poly-beta-hydroxybutyrate synthase.
 
   
 0.570
PhaR
PHB/PHA accumulation regulator DNA-binding domain protein.
 
     0.528
Lche_2283
Poly(3-hydroxybutyrate) depolymerase.
  
     0.501
adc
Acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
 
   
 0.447
Lche_2375
Hypothetical protein.
  
     0.444
Lche_2183
Hypothetical protein.
 
   
 0.432
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.