Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_2435 | Lche_2437 | Lche_2435 | Lche_2437 | GNAT family acetyltransferase. | Beta-lactamase. | 0.433 |
Lche_2435 | cocE | Lche_2435 | Lche_2436 | GNAT family acetyltransferase. | Cocaine esterase. | 0.505 |
Lche_2437 | Lche_2435 | Lche_2437 | Lche_2435 | Beta-lactamase. | GNAT family acetyltransferase. | 0.433 |
Lche_2437 | Lche_2506 | Lche_2437 | Lche_2506 | Beta-lactamase. | acyl-CoA synthetase. | 0.408 |
Lche_2437 | PksJ_2 | Lche_2437 | Lche_0505 | Beta-lactamase. | Hypothetical protein. | 0.402 |
Lche_2437 | cocE | Lche_2437 | Lche_2436 | Beta-lactamase. | Cocaine esterase. | 0.518 |
Lche_2437 | gntT | Lche_2437 | Lche_3160 | Beta-lactamase. | H gluconate symporter. | 0.430 |
Lche_2506 | Lche_2437 | Lche_2506 | Lche_2437 | acyl-CoA synthetase. | Beta-lactamase. | 0.408 |
Lche_2506 | PksJ_2 | Lche_2506 | Lche_0505 | acyl-CoA synthetase. | Hypothetical protein. | 0.999 |
PksJ_2 | Lche_2437 | Lche_0505 | Lche_2437 | Hypothetical protein. | Beta-lactamase. | 0.402 |
PksJ_2 | Lche_2506 | Lche_0505 | Lche_2506 | Hypothetical protein. | acyl-CoA synthetase. | 0.999 |
cocE | Lche_2435 | Lche_2436 | Lche_2435 | Cocaine esterase. | GNAT family acetyltransferase. | 0.505 |
cocE | Lche_2437 | Lche_2436 | Lche_2437 | Cocaine esterase. | Beta-lactamase. | 0.518 |
gntT | Lche_2437 | Lche_3160 | Lche_2437 | H gluconate symporter. | Beta-lactamase. | 0.430 |