STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CynTCarbonic anhydrase. (242 aa)    
Predicted Functional Partners:
Lche_0950
Inorganic transporter and to carbonic anhydrase (bi-functional).
 
 
0.923
IcfA
Carbonic anhydrase.
  
  
 
0.911
Lche_3135
Hypothetical protein; Belongs to the UPF0753 family.
  
    0.612
Lche_2455
Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.
       0.594
xthA
Exodeoxyribonuclease III.
     
 0.501
exoA
Exodeoxyribonuclease.
     
 0.501
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
    0.497
TycA
Peptide synthetase, non-ribosomal.
 
 
 
 0.486
wrbA
Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family.
       0.483
YrdA
Transferase.
    
 
 0.410
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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