Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
exoA | wipB | Lche_2467 | Lche_2469 | Exodeoxyribonuclease. | Substrate of the Dot/Icm secretion system. | 0.469 |
exoA | wrbA | Lche_2467 | Lche_2468 | Exodeoxyribonuclease. | Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family. | 0.599 |
exoA | xthA | Lche_2467 | Lche_2466 | Exodeoxyribonuclease. | Exodeoxyribonuclease III. | 0.984 |
wipB | exoA | Lche_2469 | Lche_2467 | Substrate of the Dot/Icm secretion system. | Exodeoxyribonuclease. | 0.469 |
wipB | wrbA | Lche_2469 | Lche_2468 | Substrate of the Dot/Icm secretion system. | Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family. | 0.599 |
wipB | xthA | Lche_2469 | Lche_2466 | Substrate of the Dot/Icm secretion system. | Exodeoxyribonuclease III. | 0.469 |
wrbA | exoA | Lche_2468 | Lche_2467 | Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family. | Exodeoxyribonuclease. | 0.599 |
wrbA | wipB | Lche_2468 | Lche_2469 | Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family. | Substrate of the Dot/Icm secretion system. | 0.599 |
wrbA | xthA | Lche_2468 | Lche_2466 | Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family. | Exodeoxyribonuclease III. | 0.599 |
xthA | exoA | Lche_2466 | Lche_2467 | Exodeoxyribonuclease III. | Exodeoxyribonuclease. | 0.984 |
xthA | wipB | Lche_2466 | Lche_2469 | Exodeoxyribonuclease III. | Substrate of the Dot/Icm secretion system. | 0.469 |
xthA | wrbA | Lche_2466 | Lche_2468 | Exodeoxyribonuclease III. | Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family. | 0.599 |