STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2503GH3 auxin-responsive promoter. (508 aa)    
Predicted Functional Partners:
Lche_2502
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
    0.887
Lche_2504
acyl-CoA dehydrogenase.
 
  
 0.780
Lche_0522
Protein phosphatase 2C.
  
     0.728
Lche_0544
Calcium-transporting ATPase.
  
     0.727
Lche_0709
Ankyrin repeat protein.
  
     0.705
Lche_0252
L-gulono-gamma-lactone oxidase.
  
     0.704
Lche_2120
Major facilitator family transporter.
  
     0.704
Lche_3036
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.699
legA
Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system.
  
     0.692
Lche_2796
O-Antigen ligase.
 
    0.687
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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