STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sdaCSerine transporter. (431 aa)    
Predicted Functional Partners:
MrgA_1
DNA-binding protein; Belongs to the Dps family.
    
   0.768
MrgA_2
Ferritin; Belongs to the Dps family.
    
   0.768
Lche_1037
Hypothetical protein.
  
   
 0.517
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.515
Dns
Putative endonuclease-1.
  
     0.501
sdhL
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
  
 0.495
bcsC
Cellulose synthase operon protein C precursor.
  
     0.488
Lche_2516
GTP cyclohydrolase II.
       0.475
Lche_2517
Putative biotin synthetase like protein.
       0.475
pagP
Antimicrobial peptide resistance and Lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
 
     0.464
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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