STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2540Substrate of the Dot/Icm secretion system. (269 aa)    
Predicted Functional Partners:
Lche_0635
IcmJ protein.
    
   0.885
Lche_1500
Hypothetical protein.
    
   0.885
Lche_0625
IcmP protein.
    
   0.769
Lche_0626
Protein IcmO (DotL).
    
   0.769
fadE_2
Acyl coenzyme A dehydrogenase.
       0.745
Lche_2543
Hypothetical protein.
       0.685
Lche_2544
Chromate transport protein.
       0.644
Lche_2541
Hypothetical protein.
       0.636
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.