STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PsuKCarbohydrate kinase, pfkB family. (320 aa)    
Predicted Functional Partners:
indA
AraC family transcriptional regulator; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
  
 0.996
pksJ_1
Polyketide synthase, type I.
  
 
 0.686
Lche_1834
acyl-CoA synthetase.
  
 
 0.686
Lche_2715
acyl-CoA synthetase.
  
 
 0.686
udk-2
Uridine kinase.
  
   
 0.681
RihA
Inosine-uridine preferring nucleoside hydrolase; Belongs to the IUNH family.
 
  
 0.678
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
  
    0.658
Lche_2506
acyl-CoA synthetase.
   
  
 0.651
LuxQ_2
Sensory histidine-kinase / response regulator.
  
  
 0.592
ArcB_1
Sensory box histidine kinase/response regulator.
  
  
 0.592
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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