STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YbhF_1ABC transporter ATP-binding protein. (300 aa)    
Predicted Functional Partners:
YbhS_1
ABC transporter permease.
  
 0.988
MacA_1
Hemolysin D.
 
  
 0.956
YbhS_2
ABC transporter permease.
  
 0.947
YbhR
ABC transporter permease.
  
 0.933
Lche_3291
Hemolysin D; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.784
OprM_1
Outer membrane efflux protein.
       0.604
mdlB
Multidrug ABC transporter ATPase/permease.
 
0.549
msbA
Lipid A export ATP-binding/permease MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
0.532
abcT
ABC transporter ATP-binding protein.
 
0.530
Lche_0070
Multidrug resistance ABC transporter ATP binding protein.
 
0.528
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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