STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OprM_1Outer membrane efflux protein. (476 aa)    
Predicted Functional Partners:
TtgC_2
Outer membrane efflux protein.
  
  
  0.976
MdtP
Outer membrane efflux lipoprotein.
  
  
 
0.929
OprM_3
Outer membrane efflux protein.
  
  
 
0.929
TtgC_1
Outer membrane efflux protein.
  
  
 
0.928
OprM_2
Outer membrane efflux protein.
  
  
 
0.928
TtgC_3
Outer membrane efflux protein.
  
  
 
0.924
Lche_2296
Agglutination protein.
  
  
 0.914
tolC
Outer membrane protein TolC.
     
 0.906
MacA_1
Hemolysin D.
  
 
 0.840
YbhS_1
ABC transporter permease.
     
 0.760
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.