STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2580Chitinase. (823 aa)    
Predicted Functional Partners:
Lche_0544
Calcium-transporting ATPase.
  
    0.733
chiA
Chitinase A precursor.
  
   0.688
pagP
Antimicrobial peptide resistance and Lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
     0.631
Lche_2502
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
    0.630
bcsC
Cellulose synthase operon protein C precursor.
  
  
 0.614
Lche_2260
Putative virulence protein.
  
     0.614
Lche_0252
L-gulono-gamma-lactone oxidase.
  
     0.599
Lche_2581
Dot/Icm secretion system substrate.
       0.566
Lche_2985
Hypothetical protein.
  
     0.544
Pla
Outer membrane protease.
  
    0.541
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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