STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iucDL-lysine N6-monooxygenase. (440 aa)    
Predicted Functional Partners:
Lche_2506
acyl-CoA synthetase.
  
 
 0.947
PksJ_2
Hypothetical protein.
 
 
 0.917
Lche_2583
Cupin domain protein.
       0.838
MetG_2
methionyl-tRNA synthetase.
       0.838
pksJ_1
Polyketide synthase, type I.
 
 
 0.830
Lche_1834
acyl-CoA synthetase.
  
 
 0.786
Lche_2715
acyl-CoA synthetase.
  
 
 0.786
Ats
Acetyltransferase (GNAT) family protein.
       0.725
LgrB
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.669
PksJ_4
Polyketide synthase.
 
 
 0.640
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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