STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2636Protein IcmE (DotG). (350 aa)    
Predicted Functional Partners:
Lche_2634
Hypothetical protein.
 
     0.903
pipB2
Secreted effector protein pipB2.
 
    
0.870
Lche_2635
Hypothetical protein.
       0.741
pipB
Secreted effector protein PipB.
  
   
 0.740
Lche_2697
Pentapeptide repeats (8 copies).
  
   
 0.728
Lche_2638
Phage-related baseplate assembly protein.
 
     0.684
spkB
Serine/threonine-protein kinase B.
 
     0.666
Lche_2639
Hypothetical protein.
 
     0.596
Lche_2640
Hypothetical protein.
 
     0.583
Lche_2643
Hypothetical protein.
 
     0.549
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.