STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
budBAcetolactate synthase; Belongs to the TPP enzyme family. (458 aa)    
Predicted Functional Partners:
Lche_2004
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.954
GabD
Aldehyde dehydrogenase.
 
 0.928
Lche_2003
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
  
 
 0.917
CitE
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
    
  0.900
MaeB_1
NADP-dependent malic enzyme.
  
 0.875
LldD_2
FMN-dependent dehydrogenase.
  
 
 0.873
sfcA_1
Malate oxidoreductase.
  
 0.844
MaeB_2
NADP-dependent malic enzyme.
  
 0.844
sfcA_2
Malate dehydrogenase.
  
 0.844
pykA
Pyruvate kinase II; Belongs to the pyruvate kinase family.
  
 0.838
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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