STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PdcPyruvate decarboxylase. (560 aa)    
Predicted Functional Partners:
pykA
Pyruvate kinase II; Belongs to the pyruvate kinase family.
   
 
 0.927
YahK_1
Zinc-type alcohol dehydrogenase-like protein.
 
 
 
 0.920
AdhT
Alcohol dehydrogenase.
 
 
 
 0.920
frmA
Alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
   
 
 0.918
lpdA
Dihydrolipoyl dehydrogenase.
   
 
 0.917
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
     
 0.916
odpB
Pyruvate dehydrogenase E1 subunit beta.
   
 
 0.914
AldA
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.911
ywdH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.911
odp
Branched-chain alpha-keto acid dehydrogenase subunit E2.
     
 0.907
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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