STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CpnAGlucose-1-dehydrogenase. (265 aa)    
Predicted Functional Partners:
XecD
Short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.762
YtcD
MarR family transporter transcriptional regulator.
 
     0.710
fabG_5
3-oxoacyl-ACP reductase.
  
 
   0.686
Pldh-t
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.624
pksJ_1
Polyketide synthase, type I.
  
 
 0.584
Lche_1834
acyl-CoA synthetase.
  
 
 0.584
Lche_2715
acyl-CoA synthetase.
  
 
 0.584
ybbO_1
Oxidoreductase with NAD(P)-binding Rossmann-fold domain protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.524
Lche_2506
acyl-CoA synthetase.
  
 
 0.511
CsgA_2
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.468
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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