Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bcp_3 | GuaC | Lche_2766 | Lche_2768 | Bacterioferritin comigratory protein. | Guanosine monophosphate reductase GuaC. | 0.457 |
Bcp_3 | Lche_2764 | Lche_2766 | Lche_2764 | Bacterioferritin comigratory protein. | Sulfur transferase; Belongs to the UPF0176 family. | 0.800 |
Bcp_3 | YbeZ_1 | Lche_2766 | Lche_2767 | Bacterioferritin comigratory protein. | PhoH protein. | 0.492 |
Bcp_3 | smpB | Lche_2766 | Lche_2765 | Bacterioferritin comigratory protein. | Trans-translation protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switch [...] | 0.800 |
GuaC | Bcp_3 | Lche_2768 | Lche_2766 | Guanosine monophosphate reductase GuaC. | Bacterioferritin comigratory protein. | 0.457 |
GuaC | YbeZ_1 | Lche_2768 | Lche_2767 | Guanosine monophosphate reductase GuaC. | PhoH protein. | 0.741 |
GuaC | smpB | Lche_2768 | Lche_2765 | Guanosine monophosphate reductase GuaC. | Trans-translation protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switch [...] | 0.438 |
Lche_2764 | Bcp_3 | Lche_2764 | Lche_2766 | Sulfur transferase; Belongs to the UPF0176 family. | Bacterioferritin comigratory protein. | 0.800 |
Lche_2764 | YbeZ_1 | Lche_2764 | Lche_2767 | Sulfur transferase; Belongs to the UPF0176 family. | PhoH protein. | 0.434 |
Lche_2764 | smpB | Lche_2764 | Lche_2765 | Sulfur transferase; Belongs to the UPF0176 family. | Trans-translation protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switch [...] | 0.800 |
Lche_3204 | Lche_3205 | Lche_3204 | Lche_3205 | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | Serine protein kinase. | 0.993 |
Lche_3204 | YbeZ_1 | Lche_3204 | Lche_2767 | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | PhoH protein. | 0.499 |
Lche_3204 | spo | Lche_3204 | Lche_3203 | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | SpoVR family protein. | 0.996 |
Lche_3205 | Lche_3204 | Lche_3205 | Lche_3204 | Serine protein kinase. | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | 0.993 |
Lche_3205 | YbeZ_1 | Lche_3205 | Lche_2767 | Serine protein kinase. | PhoH protein. | 0.521 |
Lche_3205 | spo | Lche_3205 | Lche_3203 | Serine protein kinase. | SpoVR family protein. | 0.994 |
YbeZ_1 | Bcp_3 | Lche_2767 | Lche_2766 | PhoH protein. | Bacterioferritin comigratory protein. | 0.492 |
YbeZ_1 | GuaC | Lche_2767 | Lche_2768 | PhoH protein. | Guanosine monophosphate reductase GuaC. | 0.741 |
YbeZ_1 | Lche_2764 | Lche_2767 | Lche_2764 | PhoH protein. | Sulfur transferase; Belongs to the UPF0176 family. | 0.434 |
YbeZ_1 | Lche_3204 | Lche_2767 | Lche_3204 | PhoH protein. | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | 0.499 |
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