Rna protein (Legionella cherrii) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Score

Rna

Ribonuclease T2 family protein; Belongs to the RNase T2 family. (253 aa)

Predicted Functional Partners:

rplU

0.765

rpsU

0.734

rplT

0.734

rplM

0.734

rpsI

0.734

yhbH

0.734

rpmG

0.734

rpmB

0.734

rplY

0.734

rpmA

0.734

Your Current Organism:

Legionella cherrii

NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rna	rplM	Lche_2772	Lche_0398	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.734
Rna	rplT	Lche_2772	Lche_0393	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.734
Rna	rplU	Lche_2772	Lche_0754	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.765
Rna	rplY	Lche_2772	Lche_0753	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.734
Rna	rpmA	Lche_2772	Lche_0755	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.734
Rna	rpmB	Lche_2772	Lche_0707	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.734
Rna	rpmG	Lche_2772	Lche_0706	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.734
Rna	rpsI	Lche_2772	Lche_0399	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.734
Rna	rpsU	Lche_2772	Lche_0280	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.734
Rna	yhbH	Lche_2772	Lche_0704	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	Ribosome-associated, sigma 54 modulation protein.	0.734
rplM	Rna	Lche_0398	Lche_2772	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	0.734
rplM	rplT	Lche_0398	Lche_0393	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplM	rplU	Lche_0398	Lche_0754	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplM	rplY	Lche_0398	Lche_0753	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.996
rplM	rpmA	Lche_0398	Lche_0755	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplM	rpmB	Lche_0398	Lche_0707	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.996
rplM	rpmG	Lche_0398	Lche_0706	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.996
rplM	rpsI	Lche_0398	Lche_0399	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsU	Lche_0398	Lche_0280	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.993
rplM	yhbH	Lche_0398	Lche_0704	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosome-associated, sigma 54 modulation protein.	0.919