Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2865Coiled-coil protein. (533 aa)    
Predicted Functional Partners:
MlaA
Lipoprotein VacJ-like protein.
    
 
 0.762
ankK
Substrate of the Dot/Icm secretion system.
  
    0.737
SecA_2
Coiled-coil protein.
  
     0.722
Lche_1836
Hypothetical protein.
  
     0.716
Lche_0958
IcmL-like protein.
  
 
 0.691
QmcA
Protease.
       0.691
nfeD
Peptidase.
       0.691
Lche_2866
Outer membrane protein.
  
  
 0.688
TolC_1
Outer membrane efflux protein.
  
  
 0.679
Lche_0377
CAAX amino terminal protease self- immunity.
  
     0.668
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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