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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_2932Hypothetical protein; Belongs to the UPF0102 family. (119 aa)    
Predicted Functional Partners:
LpoA
Lipoprotein.
     
 0.814
yifB
Bifunctional enzyme and transcriptional regulator.
 
  
 0.742
comF
Competence protein ComF.
 
    0.699
smf
Protein smf.
 
    0.635
yraL
Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.617
yraO
DnaA initiator-associating factor for replication initiation.
  
  
 0.613
Lche_2934
Putative lipoprotein.
     
 0.527
Cph2_4
Regulatory protein (GGDEF and EAL domains).
  
    0.504
Cph2_5
Regulatory protein (GGDEF and EAL domains).
  
    0.504
Gmr_3
Regulatory protein (GGDEF domain).
  
    0.501
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: medium (54%) [HD]
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