STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_3027Ras family GTPase. (202 aa)    
Predicted Functional Partners:
legA
Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system.
  
  0.783
Lche_2252
Carrier protein.
  
     0.766
Lche_0522
Protein phosphatase 2C.
 
 
   0.762
Lche_1932
Ectonucleoside triphosphate diphosphohydrolase.
  
     0.708
Lche_1061
Hypothetical protein.
  
     0.685
Lche_2890
Serine carboxypeptidase.
  
     0.662
Lche_0544
Calcium-transporting ATPase.
  
  0.621
DWF
7-dehydrocholesterol reductase.
  
 
  0.620
Lche_2683
Glycosyltransferase.
  
  0.607
Lche_1125
Ankyrin repeat protein.
  
  0.599
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.