STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VipFHypothetical protein; N-terminal GNAT family acetyltransferase. (294 aa)    
Predicted Functional Partners:
ankH
Ankyrin repeat-containing protein H.
  
   
 0.752
Lche_3031
Hypothetical protein.
       0.748
fabF-2
3-oxoacyl-ACP synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.703
Lche_0631
Protein IcmE (DotG).
  
   
 0.574
Lche_2153
Protein LvrA.
  
     0.562
yicO
Xanthine/uracil permease.
       0.496
Lche_3032
Hypothetical protein.
       0.482
dotA
Defect in organelle trafficking protein DotA.
  
     0.469
Lche_2838
Putative helicase/relaxase.
  
     0.451
Lche_1903
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
    0.420
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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