STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traA_2Conjugal transfer protein TraA. (1006 aa)    
Predicted Functional Partners:
AddA
UvrD/REP helicase.
  
 
 0.814
Lche_3089
Putative Methyltransferase.
 
     0.812
Lche_3100
Hypothetical protein.
 
     0.762
lvhB_6
Vir protein.
 
   
 0.708
Lche_3108
Hypothetical protein.
  
     0.699
Lche_3095
Hypothetical protein.
 
   
 0.698
Lche_0229
Transporter family transporter protein.
  
     0.694
Lche_3097
Hypothetical protein.
 
     0.691
Lche_3098
Hypothetical protein.
 
   
 0.672
Lche_2327
Coiled-coil protein.
  
     0.668
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.