Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lvhB_6Vir protein. (826 aa)    
Predicted Functional Partners:
Lche_3097
Hypothetical protein.
 
 
 0.973
Lche_3100
Hypothetical protein.
 
 
 0.971
Lche_3098
Hypothetical protein.
 
  
 0.964
lvhB3
Type IV secretion system protein VirB3.
  
 
 0.954
Lche_3095
Hypothetical protein.
 
  
 0.903
Lche_3108
Hypothetical protein.
 
   
 0.895
Lche_3099
Hypothetical protein.
  
 
 0.892
Lche_3096
Hypothetical protein; Part of the Type IV secretion system. Belongs to the GSP E family.
 
   
 0.879
lvhB_5
Vir protein B5.
   
 
 0.861
lvhB_7
Vir protein.
       0.809
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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