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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_3121Taurine catabolism dioxygenase TauD, TfdA family. (326 aa)    
Predicted Functional Partners:
novR
Decarboxylase NovR.
 
     0.856
Lche_0351
5-carboxyvanillate decarboxylase.
  
     0.597
Lche_2506
acyl-CoA synthetase.
  
  
 0.560
Lche_0359
Glyoxalase/bleomycin resistance protein.
  
    0.555
Lche_3179
FAD monooxygenase.
 
     0.547
Lche_0521
Saframycin Mx1 synthetase B.
  
  
 0.505
thi
Thiamine biosynthesis protein NMT-1.
 
    0.491
pksJ_1
Polyketide synthase, type I.
  
  
 0.488
Lche_1834
acyl-CoA synthetase.
  
  
 0.488
Lche_2715
acyl-CoA synthetase.
  
  
 0.488
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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