STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LagDToxin secretion ABC transporter ATP-binding protein. (522 aa)    
Predicted Functional Partners:
CvaA
Putative membrane fusion protein.
 
 0.976
Lche_3140
Outer membrane component of multidrug efflux pump.
 
  
 0.962
Lche_0070
Multidrug resistance ABC transporter ATP binding protein.
   
 
 0.741
msbA
Lipid A export ATP-binding/permease MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
 
 0.741
mdlB
Multidrug ABC transporter ATPase/permease.
   
 
 0.741
abcT
ABC transporter ATP-binding protein.
   
 
 0.741
GltR
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.738
tolC
Outer membrane protein TolC.
  
  
 0.679
Lche_2296
Agglutination protein.
  
  
 0.661
Lche_2327
Coiled-coil protein.
 
  
 0.656
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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