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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PhrBDeoxyribodipyrimidine photolyase phrB; Belongs to the DNA photolyase family. (472 aa)    
Predicted Functional Partners:
Lche_3144
Tryptophan-rich sensory protein.
 
  
 0.913
YeeZ
NAD-dependent epimerase/dehydratase.
       0.800
Lche_3145
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.682
Lche_3130
Cell surface lipoprotein MPB83 precursor.
 
  
 0.550
pksJ_1
Polyketide synthase, type I.
  
 
 0.544
Lche_1834
acyl-CoA synthetase.
  
 
 0.544
Lche_2715
acyl-CoA synthetase.
  
 
 0.544
sodB
Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.511
Ada
Ada protein (O6-methylguanine-DNA methyltransferase).
     
 0.493
msrA_1
Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.493
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: medium (50%) [HD]
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