Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ArcB_1 | Fnr | Lche_2876 | Lche_3153 | Sensory box histidine kinase/response regulator. | Transcriptional regulator, crp family. | 0.568 |
ArcB_1 | Gmr_3 | Lche_2876 | Lche_1926 | Sensory box histidine kinase/response regulator. | Regulatory protein (GGDEF domain). | 0.998 |
ArcB_1 | Lche_1834 | Lche_2876 | Lche_1834 | Sensory box histidine kinase/response regulator. | acyl-CoA synthetase. | 0.675 |
ArcB_1 | Lche_2715 | Lche_2876 | Lche_2715 | Sensory box histidine kinase/response regulator. | acyl-CoA synthetase. | 0.675 |
ArcB_1 | LuxQ_2 | Lche_2876 | Lche_2382 | Sensory box histidine kinase/response regulator. | Sensory histidine-kinase / response regulator. | 0.997 |
ArcB_1 | pksJ_1 | Lche_2876 | Lche_0504 | Sensory box histidine kinase/response regulator. | Polyketide synthase, type I. | 0.675 |
Fnr | ArcB_1 | Lche_3153 | Lche_2876 | Transcriptional regulator, crp family. | Sensory box histidine kinase/response regulator. | 0.568 |
Fnr | Gmr_3 | Lche_3153 | Lche_1926 | Transcriptional regulator, crp family. | Regulatory protein (GGDEF domain). | 0.503 |
Fnr | Lche_1834 | Lche_3153 | Lche_1834 | Transcriptional regulator, crp family. | acyl-CoA synthetase. | 0.553 |
Fnr | Lche_2715 | Lche_3153 | Lche_2715 | Transcriptional regulator, crp family. | acyl-CoA synthetase. | 0.553 |
Fnr | Lche_2792 | Lche_3153 | Lche_2792 | Transcriptional regulator, crp family. | 6-pyruvoyl tetrahydropterin synthase. | 0.518 |
Fnr | Lche_3152 | Lche_3153 | Lche_3152 | Transcriptional regulator, crp family. | Fatty acid desaturase. | 0.524 |
Fnr | LuxQ_2 | Lche_3153 | Lche_2382 | Transcriptional regulator, crp family. | Sensory histidine-kinase / response regulator. | 0.568 |
Fnr | cydA_2 | Lche_3153 | Lche_3154 | Transcriptional regulator, crp family. | Cytochrome d ubiquinol oxidase subunit I. | 0.595 |
Fnr | hemN_2 | Lche_3153 | Lche_3157 | Transcriptional regulator, crp family. | Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.700 |
Fnr | pksJ_1 | Lche_3153 | Lche_0504 | Transcriptional regulator, crp family. | Polyketide synthase, type I. | 0.553 |
Gmr_3 | ArcB_1 | Lche_1926 | Lche_2876 | Regulatory protein (GGDEF domain). | Sensory box histidine kinase/response regulator. | 0.998 |
Gmr_3 | Fnr | Lche_1926 | Lche_3153 | Regulatory protein (GGDEF domain). | Transcriptional regulator, crp family. | 0.503 |
Gmr_3 | Lche_1834 | Lche_1926 | Lche_1834 | Regulatory protein (GGDEF domain). | acyl-CoA synthetase. | 0.507 |
Gmr_3 | Lche_2715 | Lche_1926 | Lche_2715 | Regulatory protein (GGDEF domain). | acyl-CoA synthetase. | 0.507 |
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