STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pvcBPyoverdine biosynthesis protein PvcB. (278 aa)    
Predicted Functional Partners:
Lche_3177
Pyoverdine biosynthesis protein PvcA.
 
 0.999
Lche_3179
FAD monooxygenase.
 
     0.941
Lche_3180
Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein.
 
     0.895
oxyR
LysR transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.758
Lche_2506
acyl-CoA synthetase.
 
  
 0.693
PksJ_2
Hypothetical protein.
 
  
 0.566
Lche_0521
Saframycin Mx1 synthetase B.
 
  
 0.551
pksJ_1
Polyketide synthase, type I.
 
  
 0.534
thi
Thiamine biosynthesis protein NMT-1.
 
  
 0.457
tadA_2
tRNA-specific adenosine deaminase.
       0.436
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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