STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_3179FAD monooxygenase. (484 aa)    
Predicted Functional Partners:
Lche_3177
Pyoverdine biosynthesis protein PvcA.
 
     0.948
pvcB
Pyoverdine biosynthesis protein PvcB.
 
     0.941
Lche_3180
Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein.
       0.838
oxyR
LysR transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.732
Lche_0351
5-carboxyvanillate decarboxylase.
 
  
 0.588
Lche_1443
Cytochrome P450.
 
 
 0.579
Lche_0883
Hypothetical protein.
  
   
 0.570
Lche_3121
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.546
McrA
FAD linked oxidase.
  
  
 0.497
Lche_0602
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.469
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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