STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_3205Serine protein kinase. (643 aa)    
Predicted Functional Partners:
Lche_3204
Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family.
 
  
 0.997
spo
SpoVR family protein.
 
  
 0.996
pepN_2
Aminopeptidase.
       0.715
katA
Catalase.
   
  
 0.668
Lche_1566
Oxidoreductase,aldo/keto reductase family.
   
    0.664
Lche_2126
D-xylose reductase III.
   
    0.664
wrbA
Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family.
   
    0.646
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.644
MrgA_1
DNA-binding protein; Belongs to the Dps family.
   
    0.638
MrgA_2
Ferritin; Belongs to the Dps family.
   
    0.638
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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