Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lche_0213 | bcp | Lche_0213 | Lche_0649 | Type III restriction enzyme, res subunit. | Acetylpolyamine aminohydrolase. | 0.627 |
| Lche_0213 | hinT | Lche_0213 | Lche_3243 | Type III restriction enzyme, res subunit. | Purine nucleoside phosphoramidase. | 0.600 |
| Lche_0213 | rpoB | Lche_0213 | Lche_3380 | Type III restriction enzyme, res subunit. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.979 |
| Lche_0213 | rpoC | Lche_0213 | Lche_3379 | Type III restriction enzyme, res subunit. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.808 |
| Lche_0213 | rpoZ | Lche_0213 | Lche_1064 | Type III restriction enzyme, res subunit. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.977 |
| bcp | Lche_0213 | Lche_0649 | Lche_0213 | Acetylpolyamine aminohydrolase. | Type III restriction enzyme, res subunit. | 0.627 |
| bcp | hinT | Lche_0649 | Lche_3243 | Acetylpolyamine aminohydrolase. | Purine nucleoside phosphoramidase. | 0.424 |
| dbpA | hinT | Lche_2217 | Lche_3243 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | Purine nucleoside phosphoramidase. | 0.411 |
| dbpA | rpoB | Lche_2217 | Lche_3380 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.670 |
| dbpA | rpoC | Lche_2217 | Lche_3379 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.616 |
| dbpA | rpoZ | Lche_2217 | Lche_1064 | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.590 |
| deaD | hinT | Lche_0271 | Lche_3243 | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Purine nucleoside phosphoramidase. | 0.411 |
| deaD | rpoB | Lche_0271 | Lche_3380 | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.670 |
| deaD | rpoC | Lche_0271 | Lche_3379 | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.616 |
| deaD | rpoZ | Lche_0271 | Lche_1064 | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.590 |
| folE_2 | hinT | Lche_3242 | Lche_3243 | GTP cyclohydrolase I. | Purine nucleoside phosphoramidase. | 0.800 |
| folE_2 | ppa | Lche_3242 | Lche_3244 | GTP cyclohydrolase I. | Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | 0.502 |
| hinT | Lche_0213 | Lche_3243 | Lche_0213 | Purine nucleoside phosphoramidase. | Type III restriction enzyme, res subunit. | 0.600 |
| hinT | bcp | Lche_3243 | Lche_0649 | Purine nucleoside phosphoramidase. | Acetylpolyamine aminohydrolase. | 0.424 |
| hinT | dbpA | Lche_3243 | Lche_2217 | Purine nucleoside phosphoramidase. | ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. | 0.411 |
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