Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_2312 | Lche_3251 | Lche_2312 | Lche_3251 | Hypothetical protein. | Putative Ser/Thr protein kinase. | 0.534 |
Lche_3124 | Lche_3251 | Lche_3124 | Lche_3251 | YHS domain protein. | Putative Ser/Thr protein kinase. | 0.529 |
Lche_3250 | Lche_3251 | Lche_3250 | Lche_3251 | Hypothetical protein. | Putative Ser/Thr protein kinase. | 0.498 |
Lche_3250 | dnaX | Lche_3250 | Lche_3254 | Hypothetical protein. | DNA polymerase III subunit gamma/tau. | 0.444 |
Lche_3250 | recR | Lche_3250 | Lche_3252 | Hypothetical protein. | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.498 |
Lche_3250 | ybaB | Lche_3250 | Lche_3253 | Hypothetical protein. | Nucleoid-associated protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.498 |
Lche_3251 | Lche_2312 | Lche_3251 | Lche_2312 | Putative Ser/Thr protein kinase. | Hypothetical protein. | 0.534 |
Lche_3251 | Lche_3124 | Lche_3251 | Lche_3124 | Putative Ser/Thr protein kinase. | YHS domain protein. | 0.529 |
Lche_3251 | Lche_3250 | Lche_3251 | Lche_3250 | Putative Ser/Thr protein kinase. | Hypothetical protein. | 0.498 |
Lche_3251 | dnaX | Lche_3251 | Lche_3254 | Putative Ser/Thr protein kinase. | DNA polymerase III subunit gamma/tau. | 0.689 |
Lche_3251 | recR | Lche_3251 | Lche_3252 | Putative Ser/Thr protein kinase. | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.800 |
Lche_3251 | ybaB | Lche_3251 | Lche_3253 | Putative Ser/Thr protein kinase. | Nucleoid-associated protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.800 |
dnaX | Lche_3250 | Lche_3254 | Lche_3250 | DNA polymerase III subunit gamma/tau. | Hypothetical protein. | 0.444 |
dnaX | Lche_3251 | Lche_3254 | Lche_3251 | DNA polymerase III subunit gamma/tau. | Putative Ser/Thr protein kinase. | 0.689 |
dnaX | recR | Lche_3254 | Lche_3252 | DNA polymerase III subunit gamma/tau. | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.884 |
dnaX | ybaB | Lche_3254 | Lche_3253 | DNA polymerase III subunit gamma/tau. | Nucleoid-associated protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.896 |
recR | Lche_3250 | Lche_3252 | Lche_3250 | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | Hypothetical protein. | 0.498 |
recR | Lche_3251 | Lche_3252 | Lche_3251 | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | Putative Ser/Thr protein kinase. | 0.800 |
recR | dnaX | Lche_3252 | Lche_3254 | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | DNA polymerase III subunit gamma/tau. | 0.884 |
recR | ybaB | Lche_3252 | Lche_3253 | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | Nucleoid-associated protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.987 |
page 1 of 2