STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_3289Cyclic nucleotide-binding protein. (272 aa)    
Predicted Functional Partners:
Crp
Cyclic nucleotide-binding protein.
  
  
  0.922
YbhF_2
ABC transporter ATP-binding protein.
  
 
 0.849
Lche_0524
Dihydroorotate dehydrogenase electron transfer subunit.
 
  
 0.825
YbhR
ABC transporter permease.
  
    0.803
Lche_0535
Hypothetical protein.
  
  
 0.772
Lche_2559
Pyoverdine biosynthesis regulatory protein SyrP-like protein.
  
    0.755
Lche_2996
RasGEF domain protein.
  
     0.752
Lche_2573
Multidrug efflux protein.
  
     0.746
Lche_1061
Hypothetical protein.
  
     0.741
Lche_2717
Ankyrin repeat-containing protein.
  
 
  0.735
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.