STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yadGTransporter subunit: ATP-binding component of ABC superfamily protein. (269 aa)    
Predicted Functional Partners:
yadH
Transporter subunit: membrane component of ABC superfamily protein.
  
 0.979
lptB
Lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily protein.
    
0.757
Lche_3298
2OG-Fe(II) oxygenase.
       0.682
YbhS_1
ABC transporter permease.
 
  
 0.662
YbhS_2
ABC transporter permease.
 
  
 0.593
YbhR
ABC transporter permease.
 
  
 0.577
Lche_3297
Zinc metalloprotease.
       0.504
msbA
Lipid A export ATP-binding/permease MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 0.441
Lche_3296
Hypothetical protein.
       0.424
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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