yadG protein (Legionella cherrii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

yadG

Transporter subunit: ATP-binding component of ABC superfamily protein. (269 aa)

Predicted Functional Partners:

yadH

0.971

lptB

0.756

YbhS_1

0.596

msbA

0.569

YbhS_2

0.569

YbhR

0.552

mdlB

0.536

pksJ_1

0.514

Lche_1834

0.514

Lche_2715

0.514

Your Current Organism:

Legionella cherrii

NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lche_1834	Lche_2715	Lche_1834	Lche_2715	acyl-CoA synthetase.	acyl-CoA synthetase.	0.997
Lche_1834	mdlB	Lche_1834	Lche_1810	acyl-CoA synthetase.	Multidrug ABC transporter ATPase/permease.	0.634
Lche_1834	msbA	Lche_1834	Lche_1231	acyl-CoA synthetase.	Lipid A export ATP-binding/permease MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.634
Lche_1834	pksJ_1	Lche_1834	Lche_0504	acyl-CoA synthetase.	Polyketide synthase, type I.	0.997
Lche_1834	yadG	Lche_1834	Lche_3299	acyl-CoA synthetase.	Transporter subunit: ATP-binding component of ABC superfamily protein.	0.514
Lche_2715	Lche_1834	Lche_2715	Lche_1834	acyl-CoA synthetase.	acyl-CoA synthetase.	0.997
Lche_2715	mdlB	Lche_2715	Lche_1810	acyl-CoA synthetase.	Multidrug ABC transporter ATPase/permease.	0.634
Lche_2715	msbA	Lche_2715	Lche_1231	acyl-CoA synthetase.	Lipid A export ATP-binding/permease MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.634
Lche_2715	pksJ_1	Lche_2715	Lche_0504	acyl-CoA synthetase.	Polyketide synthase, type I.	0.997
Lche_2715	yadG	Lche_2715	Lche_3299	acyl-CoA synthetase.	Transporter subunit: ATP-binding component of ABC superfamily protein.	0.514
YbhR	YbhS_1	Lche_3287	Lche_2570	ABC transporter permease.	ABC transporter permease.	0.427
YbhR	YbhS_2	Lche_3287	Lche_3290	ABC transporter permease.	ABC transporter permease.	0.757
YbhR	lptB	Lche_3287	Lche_2046	ABC transporter permease.	Lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily protein.	0.433
YbhR	yadG	Lche_3287	Lche_3299	ABC transporter permease.	Transporter subunit: ATP-binding component of ABC superfamily protein.	0.552
YbhS_1	YbhR	Lche_2570	Lche_3287	ABC transporter permease.	ABC transporter permease.	0.427
YbhS_1	YbhS_2	Lche_2570	Lche_3290	ABC transporter permease.	ABC transporter permease.	0.435
YbhS_1	lptB	Lche_2570	Lche_2046	ABC transporter permease.	Lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily protein.	0.498
YbhS_1	yadG	Lche_2570	Lche_3299	ABC transporter permease.	Transporter subunit: ATP-binding component of ABC superfamily protein.	0.596
YbhS_2	YbhR	Lche_3290	Lche_3287	ABC transporter permease.	ABC transporter permease.	0.757
YbhS_2	YbhS_1	Lche_3290	Lche_2570	ABC transporter permease.	ABC transporter permease.	0.435