Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yadHTransporter subunit: membrane component of ABC superfamily protein. (257 aa)    
Predicted Functional Partners:
yadG
Transporter subunit: ATP-binding component of ABC superfamily protein.
  
 0.979
Lche_3298
2OG-Fe(II) oxygenase.
       0.682
Nox
Nitroreductase.
  
    0.520
Lche_3173
Nitroreductase.
  
    0.520
Lche_3297
Zinc metalloprotease.
       0.504
LptF
Hypothetical protein.
  
  
  0.445
Lche_3296
Hypothetical protein.
       0.424
Lche_0197
ABC transporter ATP-binding protein.
  
  
 0.416
YbhF_2
ABC transporter ATP-binding protein.
  
  
 0.416
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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