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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AhlDZn-dependent hydrolase GumP. (273 aa)    
Predicted Functional Partners:
Lche_3317
Coenzyme F390 synthetase FtsA.
 
     0.948
Lche_3315
3-beta hydroxysteroid dehydrogenase/isomerase.
    0.939
FabH_1
3-oxoacyl-ACP synthase.
 
  
 0.825
Lche_0077
Putative secreted esterase.
 
   
 0.667
Lche_1117
Choline kinase.
 
   0.644
McrA
FAD linked oxidase.
 
   
 0.631
Lche_0108
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.610
pksJ_1
Polyketide synthase, type I.
  
 
 0.594
Lche_1834
acyl-CoA synthetase.
  
 
 0.594
Lche_2715
acyl-CoA synthetase.
  
 
 0.594
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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