Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AhlDZn-dependent hydrolase GumP. (273 aa)    
Predicted Functional Partners:
Lche_3317
Coenzyme F390 synthetase FtsA.
 
     0.957
Lche_3315
3-beta hydroxysteroid dehydrogenase/isomerase.
  
 0.951
FabH_1
3-oxoacyl-ACP synthase.
 
  
 0.845
Lche_0077
Putative secreted esterase.
  
   
 0.660
Lche_1117
Choline kinase.
 
   0.643
McrA
FAD linked oxidase.
  
   
 0.623
Lche_0108
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.610
OprM_4
Outer membrane efflux protein.
       0.605
MdtE
Hemolysin D; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.603
Lche_0079
Cell division protein FtsI/penicillin-binding protein 2.
 
   
 0.585
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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