STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0029Zinc-dependent metallopeptidase. (605 aa)    
Predicted Functional Partners:
Lcin_1005
Glycosyl hydrolase family 18; Belongs to the glycosyl hydrolase 18 family.
  
     0.686
pepO
Metallopeptidase PepO, peptidase, M13 family.
  
   
 0.625
Lcin_1503
Putative Glutathione synthetase ATP-binding domain-like protein.
  
     0.569
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
  0.532
Lcin_2419
Dihydroorotate dehydrogenase electron transfer subunit.
 
     0.532
dsbG
NHL repeat protein.
  
     0.498
Lcin_2999
NAD dependent epimerase/dehydratase.
  
     0.467
Lcin_1054
Cytochrome P450.
  
     0.461
Lcin_1507
TfuA-like protein.
  
     0.458
Lcin_0508
Hypothetical protein.
  
     0.442
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.