STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_0236Hypothetical protein; Alpha-2-macroglobulin family N-terminal region. (1913 aa)    
Predicted Functional Partners:
pbpC
Penicillin binding protein 1C.
   
 0.979
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.611
Lcin_1645
Secreted protein.
  
     0.472
Lcin_3420
IcmF.
  
    0.472
secA_3
Coiled-coil protein.
  
     0.470
Lcin_0196
CAAX amino terminal protease self- immunity.
  
     0.462
iraA
Small-molecule methyltransferase IraA.
  
     0.445
Lcin_2804
Ankyrin repeat protein.
  
  
  0.433
Lcin_3155
Ankyrin repeats (3 copies).
  
     0.430
Lcin_1793
NHL repeat protein.
  
  
  0.419
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.