Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Lcin_0251Methyl-transferase. (245 aa)    
Predicted Functional Partners:
tycC_2
Non-ribosomal peptide synthase.
    
 0.721
Lcin_2864
Transmembrane protein.
  
     0.704
Lcin_0250
Hypothetical protein.
       0.658
gshA
Glutamate--cysteine ligase.
  
     0.656
Lcin_0915
Hypothetical protein.
  
     0.635
rlpB
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
     0.629
Lcin_0503
Saframycin Mx1 synthetase B.
  
 
 0.626
pilB
Pilus assembly protein PilB.
       0.618
pilC
Pilus assembly protein PilC.
       0.612
rkpA
Type I polyketide synthase WcbR.
     
 0.593
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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