pilD protein (Legionella cincinnatiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pilD

Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (286 aa)

Predicted Functional Partners:

pilC

0.987

pilB

0.985

lspF

0.952

lspE

0.951

lspG

0.860

Lcin_2059

0.829

yggR

0.824

lspH

0.810

yjjG

0.802

lspI

0.788

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lcin_2059	lspE	Lcin_2059	Lcin_2523	DNA internalization-related competence protein ComEC/Rec2.	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.654
Lcin_2059	lspF	Lcin_2059	Lcin_0391	DNA internalization-related competence protein ComEC/Rec2.	Type II secretory pathway protein LspF.	0.700
Lcin_2059	lspG	Lcin_2059	Lcin_0392	DNA internalization-related competence protein ComEC/Rec2.	Type II secretory pathway protein LspG.	0.490
Lcin_2059	lspH	Lcin_2059	Lcin_0393	DNA internalization-related competence protein ComEC/Rec2.	Type II secretory pathway protein LspH.	0.490
Lcin_2059	lspI	Lcin_2059	Lcin_0394	DNA internalization-related competence protein ComEC/Rec2.	Type II secretory pathway protein LspI.	0.490
Lcin_2059	pilB	Lcin_2059	Lcin_0252	DNA internalization-related competence protein ComEC/Rec2.	Pilus assembly protein PilB.	0.654
Lcin_2059	pilC	Lcin_2059	Lcin_0253	DNA internalization-related competence protein ComEC/Rec2.	Pilus assembly protein PilC.	0.734
Lcin_2059	pilD	Lcin_2059	Lcin_0254	DNA internalization-related competence protein ComEC/Rec2.	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.829
Lcin_2059	yggR	Lcin_2059	Lcin_1415	DNA internalization-related competence protein ComEC/Rec2.	Transporter.	0.461
lspE	Lcin_2059	Lcin_2523	Lcin_2059	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	DNA internalization-related competence protein ComEC/Rec2.	0.654
lspE	lspF	Lcin_2523	Lcin_0391	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type II secretory pathway protein LspF.	0.985
lspE	lspG	Lcin_2523	Lcin_0392	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type II secretory pathway protein LspG.	0.973
lspE	lspH	Lcin_2523	Lcin_0393	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type II secretory pathway protein LspH.	0.929
lspE	lspI	Lcin_2523	Lcin_0394	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type II secretory pathway protein LspI.	0.919
lspE	pilC	Lcin_2523	Lcin_0253	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Pilus assembly protein PilC.	0.955
lspE	pilD	Lcin_2523	Lcin_0254	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.951
lspE	yggR	Lcin_2523	Lcin_1415	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Transporter.	0.594
lspF	Lcin_2059	Lcin_0391	Lcin_2059	Type II secretory pathway protein LspF.	DNA internalization-related competence protein ComEC/Rec2.	0.700
lspF	lspE	Lcin_0391	Lcin_2523	Type II secretory pathway protein LspF.	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.985
lspF	lspG	Lcin_0391	Lcin_0392	Type II secretory pathway protein LspF.	Type II secretory pathway protein LspG.	0.988

page 1 of 5

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About