Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lcin_0271Isochorismatase. (201 aa)    
Predicted Functional Partners:
tdcF
L-PSP (mRNA) endoribonuclease.
 
 
 0.723
apc3
Acetophenone carboxylase gamma subunit.
    
  0.692
trpE
Anthranilate synthase.
    
 0.627
mhpC_1
Lipolytic enzyme.
  
 0.599
Lcin_1941
Lipase LipA (L, pneumophila).
  
 0.599
Lcin_2167
Alpha/beta hydrolase.
  
 0.599
catD_1
Alpha/beta hydrolase.
  
 0.599
Lcin_1696
Prolyl oligopeptidase; Belongs to the UPF0255 family.
  
     0.575
fmdA
Amidase.
  
     0.557
accC
Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
  0.550
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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