STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubRRubredoxin. (58 aa)    
Predicted Functional Partners:
Lcin_1271
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.724
tycC_2
Non-ribosomal peptide synthase.
    
  0.717
Lcin_1849
acyl-CoA synthetase.
    
  0.717
aas
Fused 2-acylglycerophospho-ethanolamine acyl transferase, acyl-acyl carrier protein synthetase.
    
  0.708
hemL
Glutamate-1-semialdehyde-2,1-aminomutase.
    
  0.672
pta
Phosphate acetyl/butaryl transferase.
     
 0.663
Lcin_0503
Saframycin Mx1 synthetase B.
    
  0.641
rkpA
Type I polyketide synthase WcbR.
    
 0.500
pksM
Polyketide synthase.
    
  0.489
plsC
1-acyl-sn-glycerol-3-phosphate acetyltransferase.
    
  0.443
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.