STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hlyBABC transporter. (723 aa)    
Predicted Functional Partners:
Lcin_0303
Multidrug resistance protein MdtN.
 
 0.994
SunT
Hypothetical protein; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 
0.974
Lcin_0304
Cyclic nucleotide-binding protein.
 
  
  0.899
tolC
Outer membrane protein TolC.
  
 
 0.757
Lcin_1599
Pyruvate phosphate dikinase.
  
     0.697
Lcin_2470
Ankyrin repeat protein.
  
     0.657
msbA
Lipid A export ATP-binding/permease MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 
0.631
msbA_1
Multidrug resistance ABC transporter ATP-binding protein.
 
 
 
0.629
Lcin_2601
6,7-dimethyl-8-ribityllumazine synthase; Belongs to the DMRL synthase family.
  
     0.620
cpo
Chloroperoxidase.
 
     0.603
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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