rpoE protein (Legionella cincinnatiensis) - STRING interaction network

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Predicted Interactions

gene neighborhood

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textmining

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protein homology

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Score

rpoE

Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)

Predicted Functional Partners:

Lcin_1315

0.886

rpoC

0.879

rpoB

0.869

cheR

0.832

rpoA

0.816

rpoZ

0.815

fimV

0.743

Lcin_1958

0.690

cptB

0.658

topA

0.645

Your Current Organism:

Legionella cincinnatiensis

NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lcin_1315	rpoE	Lcin_1315	Lcin_0337	Coiled-coil protein.	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	0.886
Lcin_1958	rpoE	Lcin_1958	Lcin_0337	Hypothetical protein.	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	0.690
cheR	rpoE	Lcin_2630	Lcin_0337	Methyltransferase involved in chemotaxis (CheR domain).	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	0.832
cptB	rpoE	Lcin_0339	Lcin_0337	Antitoxin CptB.	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	0.658
fimV	rpoE	Lcin_2501	Lcin_0337	FimV protein.	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	0.743
rpoA	rpoB	Lcin_0617	Lcin_1571	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	Lcin_0617	Lcin_1570	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoE	Lcin_0617	Lcin_0337	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	0.816
rpoA	rpoZ	Lcin_0617	Lcin_1419	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.999
rpoA	topA	Lcin_0617	Lcin_0190	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.880
rpoB	rpoA	Lcin_1571	Lcin_0617	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	Lcin_1571	Lcin_1570	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoE	Lcin_1571	Lcin_0337	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	0.869
rpoB	rpoZ	Lcin_1571	Lcin_1419	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.998
rpoC	rpoA	Lcin_1570	Lcin_0617	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	rpoB	Lcin_1570	Lcin_1571	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	rpoE	Lcin_1570	Lcin_0337	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	0.879
rpoC	rpoZ	Lcin_1570	Lcin_1419	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.997
rpoC	topA	Lcin_1570	Lcin_0190	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.800
rpoE	Lcin_1315	Lcin_0337	Lcin_1315	Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.	Coiled-coil protein.	0.886