STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_03871-aminocyclopropane-1-carboxylate deaminase. (300 aa)    
Predicted Functional Partners:
Lcin_1271
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.647
yaaA
Hypothetical protein; Belongs to the UPF0246 family.
       0.646
iraA
Small-molecule methyltransferase IraA.
  
  
  0.622
Lcin_0389
Hypothetical protein.
       0.611
glnA
Glutamine synthetase.
       0.604
metB
Cystathionine beta-lyase.
     
 0.572
aph
Spectinomycin phosphotransferase.
  
     0.543
secA_3
Coiled-coil protein.
  
     0.532
htpG
Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.
       0.526
hemL
Glutamate-1-semialdehyde-2,1-aminomutase.
    
  0.522
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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