Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lcin_03871-aminocyclopropane-1-carboxylate deaminase. (300 aa)    
Predicted Functional Partners:
yaaA
Hypothetical protein; Belongs to the UPF0246 family.
       0.749
Lcin_0389
Hypothetical protein.
       0.728
glnA
Glutamine synthetase.
       0.723
htpG
Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.
       0.674
metB
Cystathionine beta-lyase.
     
 0.656
cysK
Cystathionine beta-synthase.
     
 0.641
iraA
Small-molecule methyltransferase IraA.
  
  
  0.630
lspF
Type II secretory pathway protein LspF.
       0.618
Lcin_1271
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.599
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
     
  0.581
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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