Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lspJType II secretory pathway protein LspJ. (212 aa)    
Predicted Functional Partners:
lspI
Type II secretory pathway protein LspI.
 
 0.999
lspK
Type II secretory pathway protein LspK.
 
 
 0.999
lspG
Type II secretory pathway protein LspG.
 
 0.997
lspH
Type II secretory pathway protein LspH.
 
 0.997
lspD
Type II protein secretion LspD.
 
  
 0.967
lspF
Type II secretory pathway protein LspF.
 
  
 0.960
lspE
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.851
Lcin_3199
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.849
Lcin_1521
Conjugal transfer mating pair stabilization protein TraN.
  
 0.818
Lcin_2162
Hypothetical protein.
  
 0.818
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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